I have written and implemented a pipeline for the analysis of NGS data from various sources (ChIP-Seq, RNA-Seq, 16S rDNA, de novo assembly, etc.) which I have been using in my analyses. It utilises a number of well documented and curated tools and tracks each step of the process using a centralised mysql database. I am currently working to make this portable as I believe that it may be of use to other researchers. Once this is complete, I will make the code available here.
